Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs61256984 | chr4:10027509 | GA/G | 3.69E-5 | 184 | 13.22 | 13.6 | 8.1 | KM Plot |
| ESCA | rs612659 | chr15:65612976 | G/A | 7.07E-5 | 183 | 12.9 | 16.53 | 4.08 | KM Plot |
| ESCA | rs61362570 | chr16:86447145 | G/C | 1.35E-5 | 182 | 13.4 | 12.77 | 3.2 | KM Plot |
| ESCA | rs61564811 | chr10:743240 | C/G | 9.03E-5 | 183 | 13.1 | 13.42 | 4.73 | KM Plot |
| ESCA | rs61742765 | chr19:10114252 | C/G | 2.32E-8 | 180 | 13.33 | 13.73 | 3.35 | KM Plot |
| ESCA | rs61852638 | chr1:247219961 | T/C | 1.23E-7 | 180 | 13.1 | 14.13 | 3.87 | KM Plot |
| ESCA | rs61852646 | chr1:247260534 | T/A | 4.0E-7 | 184 | 13.1 | 20.3 | 3.87 | KM Plot |
| ESCA | rs61953483 | chr12:123894303 | T/C | 1.73E-7 | 180 | 13.1 | 15.87 | 2.7 | KM Plot |
| ESCA | rs61953484 | chr12:123894641 | G/A | 1.73E-7 | 180 | 13.1 | 15.87 | 2.7 | KM Plot |
| ESCA | rs61955083 | chr12:123843379 | C/T | 1.73E-7 | 180 | 13.1 | 15.87 | 2.7 | KM Plot |
| ESCA | rs61955085 | chr12:123845745 | C/T | 1.81E-7 | 179 | 13.07 | 15.87 | 2.7 | KM Plot |
| ESCA | rs61955089 | chr12:123851372 | T/C | 6.07E-7 | 182 | 13.1 | 15.57 | 2.7 | KM Plot |
| ESCA | rs61955114 | chr12:123851644 | G/A | 6.07E-7 | 182 | 13.1 | 15.57 | 2.7 | KM Plot |
| ESCA | rs62104337 | chr19:10114740 | T/A | 3.21E-6 | 181 | 13.22 | 13.93 | 4.37 | KM Plot |
| ESCA | rs62524406 | chr8:96302719 | G/T | 5.69E-9 | 181 | 12.97 | 14.57 | 4.15 | KM Plot |